logseq/pages/NextFlow.md

type:: weblink source:: (93) Introduction to Nextflow for Data Intensive Pipelines: Part 1 - YouTube tags:: readingnotes date:: 21-01-2023 - 17:13

- ![image.png](../assets/image_1674317591147_0.png)
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	- Processes are tasks to be performed
		- it can be script, snippet of code, command line application etc.
		- You need to specify input and output
		- Each task gets its own directory in the filesystem
			- In this way you avoid overwriting files, ar easy debugging
	- ![image.png](../assets/image_1674318826828_0.png)
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	- type:: [[weblink]]
	  source:: [(94) [Nextflow DSL2] Running a remote pipeline using Docker - YouTube](https://www.youtube.com/watch?v=1km8tPMU5Vo&ab_channel=AndreaTelatin) [telatin/nextflow-example: A simple DSL2 workflow: tutorial (github.com)](https://github.com/telatin/nextflow-example)
	  [(94) Nextflow Training Workshop - July 2020 - Day 1 - YouTube](https://www.youtube.com/watch?v=8_i8Tn335X0&ab_channel=Nextflow)
	  tags:: [[readingnotes]]
	  date:: [[21-01-2023]] - 18:10
		- ![image.png](../assets/image_1674322481681_0.png)
		- ![image.png](../assets/image_1674322770788_0.png)